The authors would like to thank the University of Vienna for supporting KYL and the UK Engineering and Physical Science Research Council (EPSRC) for a Follow-on Fund for funding SRS and the work (EP/J013390/1).

1. Preparation of Bacterial Cellulose-sisal Fiber Suspension
<ol>
	<li>Determine the wet-to-dry mass of BC by measuring the wet mass of BC, followed by vacuum drying of wet BC at 80 &#176;C overnight (O/N). Once dried, measure the dry mass of BC.</li>
	<li>Measure the amount of wet BC pellicle equivalent to 18 g of dry BC from the pre-determined wet-to-dry mass of BC.</li>
	<li>Cut the wet BC pellicles into small pieces of ~1-2 cm using a pair of sharp scissors. After cutting, soak the BC pellicles in 1 L of water to allow for the hydration of cut pellicles.</li>
	<li>Feed the cut BC pellicle into a blender and add an appropriate amount of water into the blender such that the blending process will go smoothly.</li>
	<li>Blend these BC pellicles for 2 min.</li>
	<li>Pour the blended BC into a 15&#160;L container and add water until the total water volume is 14 L, making up a BC concentration in water of 0.1 (g/ml)% (percentage mass of bacterial cellulose per unit volume of water). The BC pellicles might need to be fed into the blender in batches for blending.</li>
	<li>Cut 72 g of loose sisal fibers (or any source of short natural fibers) into 1-2 cm long fibers and add them into the BC suspension. Gently stir the suspension to ensure a homogenous dispersion of sisal fibers in the BC suspension.</li>
	<li>Soak the sisal fibers in this suspension O/N.</li>
</ol>
2. Manufacturing of Sisal Fiber Preform
<ol>
	<li>Open sheet mold and close the drainage valve.</li>
	<li>Fill the system with DI water until the water level reaches the backing wire.</li>
	<li>Place a 100 mesh metal forming wire on the backing wire, centered within the sheet mold base.</li>
	<li>Close and latch the sheet mold. Add additional fresh water until the forming wire is submerged in water.</li>
	<li>Pour the prepared sisal fiber-BC suspension into the sheet mold. Gently stirring the suspension to ensure that the sisal fibers are homogenously distributed throughout the mold.</li>
	<li>Open the drain valve to drain the water, which will result in the formation of a wet filter cake of sisal fibers and BC on the forming wire. Immediately after the water drains, open the sheet mold and remove the forming wire.</li>
	<li>Place the forming wire on a piece of blotting paper. Additional blotting papers are placed on the top of the filter cake, followed by a metal plate.</li>
	<li>Flip the filter cake around. With the forming wire now facing the top, remove the forming wire and place additional blotting paper directly on top of the filter cake, followed by a metal plate.</li>
	<li>Place a 10 kg weight on top of the metal plate to press the water out. When the blotting paper is fully soaked, replace the blotting papers with fresh blotting papers and press the filter cake again using a weight of 10 kg.</li>
	<li>Replace the blotting papers 1&#160;final time and perform a final pressing of 1 ton in a hot press to consolidate the fiber preform.</li>
	<li>Heat the hot press up to 120 &#176;C to aid the evaporation of residual water. This should take approximately 4 hr. Reduce the temperature of the hot press to room temperature (RT) and allow the preform to cool down prior to removal from the hot press.</li>
</ol>
3. Scanning Electron Microscopy (SEM) of the BC-sisal Fiber Preform
<ol>
	<li>Cut a 2 &#215; 2 cm2 BC-sisal fiber preform.</li>
	<li>Stick this cut preform onto SEM stub using carbon tabs.</li>
	<li>Coat the sample in a Cr sputter coater operating at 75 mA for 1 min.</li>
	<li>Image the BC-sisal fiber preform with field emission gun SEM in in-lens mode using a beam energy of 5 kV. 
	Note: Do not try to image the sisal-fiber preform without gluing the preform onto the SEM stub using conductive adhesive. The loose fibers will be sucked away during the evacuation of the SEM chamber and damage the electron gun.</li>
</ol>
4. Composite Manufacturing using Vacuum Assisted Resin Infusion (VARI)
<ol>
	<li>Place the preform on top of the tooling side, which consists of a non-porous PTFE coated glass release fabric.</li>
	<li>Cover the preform with a porous PTFE coated glass release fabric, also known as a peel ply, followed by a porous flow medium. Both the peel ply and the flow medium should be larger that the preform (see Figure 2 for a process schematic).</li>
	<li>Position the omega tubes at the intended resin inlet and outlet of the VARI set up. Ensure that the omega tubes are placed on top of the porous flow medium to allow&#160;the resin to distribute into the VARI set up during infusion. The length of omega tubes should be as wide as the flow medium.</li>
	<li>Place pressure sensitive tapes around the periphery of the set up.
	<ol>
		<li>Ensure that the paper backing of the pressure sensitive tapes is still left on the tapes at this point.</li>
		<li>Insert the resin feed and outlet tubes into the openings of the omega tubes and cover the set up with a fluoroethylene polymer based bagging film and seal it using pressure sensitive tapes.</li>
		<li>Seal the resin feed tube. Position the other end of the resin outlet tube on top of the breather cloth.</li>
	</ol>
	</li>
	<li>Place a metal plate on top of the inner bag where the fiber preform is, followed by a piece of breather cloth. The metal plate should be the size of the preform.</li>
	<li>Identify the position where the through bag vacuum valve should be and place the bottom piece of the valve on top of the breather cloth.</li>
	<li>Place the vacuum sealant tape around the internal bag and place a vacuum bagging film on top of it and seal it. The excess vacuum bagging film will form pleats.</li>
	<li>Place the sealant tape inside the pleat to complete the seal.</li>
	<li>Cut a small &#39;x&#39; on the vacuum bagging film where the bottom piece of the valve is and screw in the top piece to complete the through bag vacuum valve. It is important to avoid wrinkling of the vacuum bagging film under the top piece as this could cause a leak path.</li>
	<li>Connect the quick connect fitting and pull a vacuum. During this process, the vacuum bagging film can be moved around and place where excess is needed. Check for vacuum leaks.</li>
	<li>Prepare the resin by mixing the epoxy and hardener at a weight ratio of 100 to 19. Degas the resin at a reduced pressure to remove all the air bubbles trapped during the mixing of the epoxy resin and hardener.</li>
	<li>Once the VARI set up is determined to be leakage-free, feed the resin via the tubing connected to the omega tube.</li>
	<li>Ensure that the resin is fed slowly such that it has time to impregnate into the fiber preform. Allow&#160;the resin to flow out from the resin outlet tube and soak into the breather cloth until no air bubbles can be observed coming out from the outlet tube.</li>
	<li>Seal the outlet tube and allow the resin to cure for 24 hr at RT, followed by a post-curing step at 50 &#176;C for 16 hr. 
	Note: (1) The curing cycle is resin dependent. (2) It is very important that maximum vacuum is achieved within the VARI set up and there is no vacuum leak within set up. A poor VARI set up (not achieving maximum vacuum or a leak) will result in pores within the manufactured composites and significantly reduced fiber volume fraction within the composites. (3) The epoxy-to-hardener ratio is resin dependent. Please check the product datasheet of the resin for the epoxy-to-hardener ratio prior to mixing.</li>
</ol>

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The authors have nothing to disclose.

We have shown in this experiment that loose sisal fibers can be bound with BC. However, the choice of fibers is not limited to just sisal fibers. Other types of fibers, such as flax and hemp, can also be used. In addition to this, we have also shown that wood flour, recycled paper, and dissolving pulp can also be bound into rigid and robust preforms using a BC binder (results not published yet). The criterion is that the fibers used should be hydrophilic and absorb water. As aforementioned, the hydrophilic nature of the fibers will absorb water, drawing in the BC that is dispersed in the medium. The BC is filtered against the surface of these hydrophilic fibers and forms a layer of BC coating when the fibers were dried. Whilst bacterial cellulose can be deposited around natural fibers by culturing Acetobacter xylinus in the presence of natural fibers5,29,30, this process is laborious and requires expensive bioreactors with tight control of pH and dissolved oxygen content. Our improved process, on the other hand, is based on a papermaking method (i.e.: dispersing natural fibers in a BC suspension) and there is no need for bioreactors31.
With regards to the application of natural fibers in composites, randomly oriented non-woven (short and randomly oriented) natural fiber preforms are produced by needle punching (essentially stitching) polymer fibers (typically a polyester) through loose compacted fibers33. To make a composite, the fiber preforms are then placed in a mold and infused with a resin. Polymers fibers can also be commingled with natural fibers34 (typically flax, hemp, or jute) or dispersed in a natural fiber suspension and vacuum filtered35 at high polymer volume fraction (50 vol.%). This polymer fiber-natural fiber mat (preform) is then subsequently heated to melt the polymer to produce a composite structure. The latter processes of producing composites are intrinsically scalable but are limited by the choice of polymer fibers (the polymer should melt at temperatures lower than the degradation temperature of the fibers) that can be used to make preforms and, therefore, the type of matrices available to make composites. Using our method, BC does not only act as a binder, it also acts as a nano-reinforcement32. As aforementioned, the Young&#39;s modulus of an individual BC nanofiber was estimated to be 114 GPa. Whilst the single fiber tensile strength of BC is not known, the tensile strength of single TEMPO-oxidized wood and tunicate fibers has been recently measured using ultrasonic induced cavitation36. A tensile strength of between 0.8-1.5 GPa was measured for these single nanofibers. These mechanical properties, along with the binding potential of BC, made BC an excellent candidate to produce truly green and randomly oriented short natural fiber-reinforced, bacterial cellulose-reinforced renewable composites with mechanical performance that exceeds conventional fiber-reinforced polymers.
In term of composite manufacturing, our preferred manufacturing process is the discussed double bag vacuum assisted resin infusion (DBVI) developed by Waldrop et al.37 Unlike the more conventional single bag vacuum assisted resin infusion (also known as the Seemann process38), DBVI employs two independent vacuum bags during the infusion process (see Figure&#160;2). Whilst the Seemann process will work for manufacturing composites, this process might suffer from vacuum bag relaxation behind the flow front of the resin. When this occurs, the area where relaxation occurs will feel soft and spongy. The vacuum bag relaxation will result in the vacuum bag moving away from the flow medium due to the preferential flow of liquid resin in the path of least resistance. This will cause the manufactured composites to have non-uniform fiber volume fractions (i.e.&#160;the relaxed area will have a lower fiber volume fraction than the non-relaxed area of the vacuum bag). DBVI does not suffer from this drawback, as the inner vacuum bag never relaxes behind the flow front of the liquid resin. As a result, the resulting composite panels will have higher than average fiber volume fraction and more uniform thickness. Moreover, the use of the outer vacuum bag provides a redundancy to the system and improves the vacuum integrity of the liquid infusion process.

Steadily increasing oil prices and the public's growing demand for a sustainable future have sparked and revived the research and development of green materials, especially polymers and composites. Unfortunately, the thermo-mechanical performance of green or renewable polymers is often inferior compared to traditional petroleum based polymers1. For instance, commercially available polylactide (PLA) and polyhydroxybutyrate (PHB) are brittle and possess low heat distortion temperatures. One solution of creating renewable materials that match or even exceed the performance of commonly used petroleum-based engineering materials is to learn from the past; Henry Ford used a composite strategy, i.e. combining bio-based/renewable polymers with a reinforcement2, to enhance the properties of renewable polymers. It is often claimed that natural fibers serve as ideal candidate as reinforcement because of their low cost, low density, renewability and biodegradability3. Natural fiber composites have seen a renaissance in the 1990's as can be seen by the exponential increase in the number of peer-reviewed scientific publications (Figure 1)4. However, the hydrophilic nature of natural fibers and hydrophobic characteristics of most thermoplastics are often blamed to result in poor fiber-matrix adhesion5, which often results in poor mechanical performance of the resulting fiber-reinforced polymer composites. To solve this challenge, numerous researchers attempted to chemically modify the surfaces of natural fibers6,7. These chemical modifications include acetylation8, silylation9, polymer grafting10, isocyanate treatments11,12, use of maleated coupling agents13-17, and benzoylation18. Even though these chemical treatments have rendered natural fibers more hydrophobic, the resulting natural fiber-reinforced polymers still failed to deliver in terms of mechanical performance19. Thomason20 hypothesized that this failure could be a result of the anisotropicity and the high linear thermal coefficient of expansion of natural fibers. In addition to this, natural fibers also suffer from drawbacks such as limited processing temperature21, batch-to-batch variability3, low tensile strength compared to synthetic fibers, such as glass, aramid or carbon fibers and the lack of suitable manufacturing processes to produce natural fibers reinforced polymer composites. Thus, using natural fibers as reinforcement will not be sufficient to close the aforementioned property-performance gap between green materials and petroleum-based polymers.
Nanocellulose is an emerging green reinforcing agent. In particular, nanocellulose produced by bacteria, such as from the Acetobacter species22, also known as bacterial cellulose serves as an interesting alternative for the design of green materials23 due to the possibility of exploiting the high stiffness and strength of cellulose crystals24. The stiffness of a single cellulose crystal was estimated to be approximately 100-160 GPa using X-ray diffraction, Raman spectroscopy and numerical simulations25-27. This is higher than glass fibers ~70 GPa, which are however much denser. Bacterial cellulose (BC) is also inherently nano-sized with a diameter of approximately 50 nm and several micrometers in length28. We reported a method to coat natural (sisal and hemp) fibers with layers of BC by culturing Acetobacter xylinius in the presence of natural fibers5,29,30. This led to improved interfacial adhesion between PLLA and BC-coated natural fibers29,31. In order to simplify the process of coating these fibers, Lee et al.31 developed a method of coating natural (sisal) fibers without the use of bioreactors. This method is based slurry dipping process, whereby dry sisal fibers are immersed into a BC suspension. An extension of this method32 is to filter the water suspension containing loose sisal fibers and BC to produce sisal fiber preforms suitable for typical composite structures manufacturing.

<table border="0" cellpadding="0" cellspacing="0" style="width:1196px;" width="1196">
	<colgroup>
		<col />
		<col />
		<col />
		<col />
	</colgroup>
	<tbody>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Name of Material/ Equipment</td>
			<td style="width:216px;">Company</td>
			<td style="width:119px;">Catalog Number</td>
			<td style="width:624px;">Comments/Description</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Bacterial cellulose</td>
			<td style="width:216px;">fzmb</td>
			<td style="width:119px;">9004-34-6</td>
			<td>The CAS number is based on the CAS number for cellulose</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Sisal fibres</td>
			<td style="width:216px;">Wigglesworth &#38; Co. Ltd, UK</td>
			<td style="width:119px;">-</td>
			<td>The type of fibres can be substituted with any type of natural fibres</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Prime 20 ULV</td>
			<td style="width:216px;">SP Gurit</td>
			<td style="width:119px;">-</td>
			<td>The type of resin can be substituted with any type of liquid resin designed for vacuum assisted resin infusion</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;"></td>
			<td style="width:216px;"></td>
			<td style="width:119px;"></td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:237px;">Formax standard sheet mould</td>
			<td style="width:216px;">Adirondack Machine Corporation</td>
			<td style="width:119px;">-</td>
			<td>This piece of equipment could be replaced with a B&#252;chner funnel.</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Vacuum pump</td>
			<td style="width:216px;">Edwards, UK</td>
			<td style="width:119px;">XDS 5</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Hot plate</td>
			<td style="width:216px;">Wenesco Inc, USA</td>
			<td style="width:119px;">HP 1836-AH</td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:237px;">Porous PTFE coated glass release fabric</td>
			<td style="width:216px;">Tygavac Advaced Materials Ltd, UK</td>
			<td style="width:119px;">TFG075P</td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:237px;">Omega tubes</td>
			<td style="width:216px;">Tygavac Advaced Materials Ltd, UK</td>
			<td style="width:119px;">Omegaflow 313</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Breather cloth</td>
			<td style="width:216px;">EasyComposites Ltd, UK</td>
			<td style="width:119px;">-</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Pressure sensitive tapes</td>
			<td style="width:216px;">Aerovac, UK</td>
			<td style="width:119px;">SM5127</td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:237px;">Vacuum bagging film (FEP)</td>
			<td style="width:216px;">Tygavac Advaced Materials Ltd, UK</td>
			<td style="width:119px;">RF260</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:237px;">Vacuum bagging film (Nylon)</td>
			<td style="width:216px;">Aerovac, UK</td>
			<td style="width:119px;">Capran 519</td>
			<td></td>
		</tr>
	</tbody>
</table>

manufacturing of robust natural fiber preforms utilizing bacterial cellulose as binder

A novel method of manufacturing rigid and robust natural fiber preforms is presented here. This method is based on a papermaking process, whereby loose and short sisal fibers are dispersed into a water suspension containing bacterial cellulose. The fiber and nanocellulose suspension is then filtered (using vacuum or gravity) and the wet filter cake pressed to squeeze out any excess water, followed by a drying step. This will result in the hornification of the bacterial cellulose network, holding the loose natural fibers together.
Our method is specially suited for the manufacturing of rigid and robust preforms of hydrophilic fibers. The porous and hydrophilic nature of such fibers results in significant water uptake, drawing in the bacterial cellulose dispersed in the suspension. The bacterial cellulose will then be filtered against the surface of these fibers, forming a bacterial cellulose coating. When the loose fiber-bacterial cellulose suspension is filtered and dried, the adjacent bacterial cellulose forms a network and hornified to hold the otherwise loose fibers together.
The introduction of bacterial cellulose into the preform resulted in a significant increase of the mechanical properties of the fiber preforms. This can be attributed to the high stiffness and strength of the bacterial cellulose network. With this preform, renewable high performance hierarchical composites can also be manufactured by using conventional composite production methods, such as resin film infusion (RFI) or resin transfer molding (RTM). Here, we also describe the manufacturing of renewable hierarchical composites using double bag vacuum assisted resin infusion.

Without a BC binder, the short, loose sisal fibers are held together only by friction and entanglements between the fibers. As a result, this preform is loose and it was not able to support much weight. Figure 3 shows the sisal fiber preform without BC as the binder, with a load applied in 3-point bending mode. The preform can be seen to be rather loose and when a load is applied by adding water into the polypropylene cup, the preform starts to deflect severely. The load applied is equivalent to 40 g of water. However, when 20 wt.% BC was used as the binder for these short and loose sisal fibers, a rigid fiber preform is manufactured. This preform can withstand the load of a full polypropylene cup (~170 g) without any significant deflection (Figure 3).
Scanning electron micrographs of a typical BC-sisal fiber preform are shown in Figure 4. BC can be seen to be covering the surface of the sisal fibers. This effect is due to the hydrophilic nature of sisal fibers (or any other natural fibers). The hydrophilic nature of sisal fibers absorbs water, drawing in the BC that is dispersed in the medium. Since BC is larger than the pores of natural fibers, they were not able to penetrate into the fibers. Instead, they were filtered against the surface of sisal fibers and form a layer of BC coating when the fibers were dried.
The mechanical performance of these fiber preforms under tension is tabulated in Table 1. Due to the porous nature of the fiber preforms with a porosity of ~70%, the tensile strength (load per unit area) of the preform is not well defined. Therefore, we tabulate the tensile force (load required to fail the specimen per unit width, which is 15 mm in our experiment, of the material) and the tensile index (tensile force per unit grammage) of our specimen. A tensile force and tensile index of 12.1 kN&#183;m-1 and 15 N&#183;m&#183;g-1 was measured, respectively, when 20 wt.% BC was used as the binder. However, the tensile properties of neat sisal fiber preforms were not measurable as the fiber preform is loose.
Figure Legends:
<img alt="Figure 1" fo:content-width="5in" fo:src="/files/ftp_upload/51432/51432fig1highres.jpg" src="/files/ftp_upload/51432/51432fig1.jpg" /> 
Figure 1. Number of publications in the field of natural fibers and composites. The data was collected from the Web of Knowledge by using a keyword search of &#39;natural fib*&#39; AND &#39;composite*&#39;, respectively. Obtained from Bismarck et al.4 with kind permission from American Scientific Publishing Ltd.
<img alt="Figure 2" fo:content-width="5in" fo:src="/files/ftp_upload/51432/51432fig2highres.jpg" src="/files/ftp_upload/51432/51432fig2.jpg" /> 
Figure 2. Schematic of double bag vacuum assisted resin infusion.
<img alt="Figure 3" fo:content-width="5in" fo:src="/files/ftp_upload/51432/51432fig3highres.jpg" src="/files/ftp_upload/51432/51432fig3.jpg" /> 
Figure 3. Photographs illustrating the difference in bending stiffness of sisal fiber preforms without (top two images) and with (bottom two images) BC as binder.
<img alt="Figure 4" fo:content-width="3in" fo:src="/files/ftp_upload/51432/51432fig4highres.jpg" src="/files/ftp_upload/51432/51432fig4.jpg" /> 
Figure 4. Scanning electron micrographs of a typical natural fiber preform using BC as binder at various magnifications. Top: 100X, middle: 1,000X and bottom: 25,000X, respectively. (a) and (b) denote the sisal fiber and BC nanofibrils, respectively.
<table border="1" cellpadding="0" cellspacing="0">
	<tbody>
		<tr>
			<td>Materials</td>
			<td>Tensile force (kN&#183;m-1)</td>
			<td>Tensile index (N&#183;m&#183;g-1)</td>
		</tr>
		<tr>
			<td>Neat sisal preform</td>
			<td>Not measurable</td>
			<td>Not measurable</td>
		</tr>
		<tr>
			<td>BC-sisal preform</td>
			<td>12.1 &#177; 2.4</td>
			<td>15 &#177; 3</td>
		</tr>
	</tbody>
</table>
Table 1. Tensile properties of the sisal fiber preforms, with and without BC as the binder.

Watch this Scientific Journal Video about Manufacturing Of Robust Natural Fiber Preforms Utilizing Bacterial Cellulose as Binder at JoVE.com

Manufacturing Of Robust Natural Fiber Preforms Utilizing Bacterial Cellulose as Binder

We present a novel method of manufacturing rigid and robust short natural fiber preforms using a papermaking process. Bacterial cellulose acts simultaneously as the binder for the loose fibers and provides rigidity to the fiber preforms. These preforms can be infused with a resin to produce truly green hierarchical composites.

A novel method of manufacturing rigid and robust natural fiber preforms is presented here. This method is based on a papermaking process, whereby loose ...

manufacturing-robust-natural-fiber-preforms-utilizing-bacterial

Research

JoVE Journal

Bioengineering

27.4K Views.  University of Vienna.  Мы представляем новый способ изготовления жестких и надежных коротких заготовок из натуральных волокон с помощью процесса изготовления бумаги. Бактериальный целлюлоза действует одновременно в качестве связующего для свободных волокон и обеспечивает жест...

Video: Manufacturing Of Robust Natural Fiber Preforms Utilizing Bacterial Cellulose as Binder

Patient-specific Modeling of the Heart: Estimation of Ventricular Fiber Orientations

Patient-specific simulations of heart (dys)function aimed at personalizing cardiac therapy are hampered by the absence of in vivo imaging technology for clinically acquiring myocardial fiber orientations. The objective of this project was to develop a methodology to estimate cardiac fiber orientations from in vivo images of patient heart geometries. An accurate representation of ventricular geometry and fiber orientations was reconstructed, respectively, from high-resolution ex vivo structural magnetic resonance (MR) and diffusion tensor (DT) MR images of a normal human heart, referred to as the atlas. Ventricular geometry of a patient heart was extracted, via semiautomatic segmentation, from an in vivo computed tomography (CT) image. Using image transformation algorithms, the atlas ventricular geometry was deformed to match that of the patient. Finally, the deformation field was applied to the atlas fiber orientations to obtain an estimate of patient fiber orientations. The accuracy of the fiber estimates was assessed using six normal and three failing canine hearts. The mean absolute difference between inclination angles of acquired and estimated fiber orientations was 15.4 &deg;. Computational simulations of ventricular activation maps and pseudo-ECGs in sinus rhythm and ventricular tachycardia indicated that there are no significant differences between estimated and acquired fiber orientations at a clinically observable level.The new insights obtained from the project will pave the way for the development of patient-specific models of the heart that can aid physicians in personalized diagnosis and decisions regarding electrophysiological interventions.

A methodology to estimate ventricular fiber orientations from in vivo images of patient heart geometries for personalized modeling is described. Validation of the methodology performed using normal and failing canine hearts demonstrate that that there are no significant differences between estimated and acquired fiber orientations at a clinically observable level.

Patient-specific  simulations of heart (dys)function aimed at personalizing cardiac therapy are hampered  by the absence of in vivo imaging technology for ...

High-throughput, Automated Extraction of DNA and RNA from Clinical Samples using TruTip Technology on Common Liquid Handling Robots

TruTip is a simple nucleic acid extraction technology whereby a porous, monolithic binding matrix is inserted into a pipette tip. The geometry of the monolith can be adapted for specific pipette tips ranging in volume from 1.0 to 5.0 ml. The large porosity of the monolith enables viscous or complex samples to readily pass through it with minimal fluidic backpressure. Bi-directional flow maximizes residence time between the monolith and sample, and enables large sample volumes to be processed within a single TruTip. The fundamental steps, irrespective of sample volume or TruTip geometry, include cell lysis, nucleic acid binding to the inner pores of the TruTip monolith, washing away unbound sample components and lysis buffers, and eluting purified and concentrated nucleic acids into an appropriate buffer. The attributes and adaptability of TruTip are demonstrated in three automated clinical sample processing protocols using an Eppendorf epMotion 5070, Hamilton STAR and STARplus liquid handling robots, including RNA isolation from nasopharyngeal aspirate, genomic DNA isolation from whole blood, and fetal DNA extraction and enrichment from large volumes of maternal plasma (respectively).

TruTip is a simple nucleic acid extraction technology whereby a porous, monolithic binding matrix is inserted into a pipette tip. Consequently, the sample preparation format is compatible with most liquid handling instruments, and can be used for many medium to high-throughput clinical applications and sample types.

TruTip is a simple nucleic acid extraction  technology whereby a porous, monolithic binding matrix is inserted into a  pipette tip. The geometry of the ...

Manufacturing Devices and Instruments for Easier Rat Liver Transplantation

Orthotopic rat liver transplantation is a popular model, which has been shown in a recent JoVE paper with the use of the "quick-linker" device. This technique allows for easier venous cuff-anatomoses after a reasonable learning curve. The device is composed of two handles, which are carved out from scalpel blades, one approximator, which is obtained by modifying Kocher's forceps, and cuffs designed from fine-bore polyethylene tubing. The whole process can be performed at a low-cost using common laboratory material. The present report provides a step-by-step protocol for the design of the required pieces and includes stencils.

We describe the design of the &#x201C;quick-linker&#x201D; device for easier orthotopic rat liver transplantation.

Orthotopic rat liver transplantation is a popular model, which has been shown in a recent JoVE paper with the use of the "quick-linker" device. This ...

Cell Squeezing as a Robust, Microfluidic Intracellular Delivery Platform

Rapid mechanical deformation of cells has emerged as a promising, vector-free method for intracellular delivery of macromolecules and nanomaterials. This technology has shown potential in addressing previously challenging applications; including, delivery to primary immune cells, cell reprogramming, carbon nanotube, and quantum dot delivery. This vector-free microfluidic platform relies on mechanical disruption of the cell membrane to facilitate cytosolic delivery of the target material. Herein, we describe the detailed method of use for these microfluidic devices including, device assembly, cell preparation, and system operation. This delivery approach requires a brief optimization of device type and operating conditions for previously unreported applications. The provided instructions are generalizable to most cell types and delivery materials as this system does not require specialized buffers or chemical modification/conjugation steps. This work also provides recommendations on how to improve device performance and trouble-shoot potential issues related to clogging, low delivery efficiencies, and cell viability.

Rapid mechanical deformation of cells has emerged as a promising, vector-free method for intracellular delivery of macromolecules and nanomaterials. This protocol provides detailed steps on how to use the system for a broad range of applications.

Rapid mechanical deformation of cells has emerged as a promising, vector-free method for intracellular delivery of macromolecules and nanomaterials. This ...

Electrospun Nanofiber Scaffolds with Gradations in Fiber Organization

The goal of this protocol is to report a simple method for generating nanofiber scaffolds with gradations in fiber organization and test their possible applications in controlling cell morphology/orientation. Nanofiber organization is controlled with a new fabrication apparatus that enables the gradual decrease of fiber organization in a scaffold. Changing the alignment of fibers is achieved through decreasing deposition time of random electrospun fibers on a uniaxially aligned fiber mat. By covering the collector with a moving barrier/mask, along the same axis as fiber deposition, the organizational structure is easily controlled. For tissue engineering purposes, adipose-derived stem cells can be seeded to these scaffolds. Stem cells undergo morphological changes as a result of their position on the varied organizational structure, and can potentially differentiate into different cell types depending on their locations. Additionally, the graded organization of fibers enhances the biomimicry of nanofiber scaffolds so they more closely resemble the natural orientations of collagen nanofibers at tendon-to-bone insertion site compared to traditional scaffolds. Through nanoencapsulation, the gradated fibers also afford the possibility to construct chemical gradients in fiber scaffolds, and thereby further strengthen their potential applications in fast screening of cell-materials interaction and interfacial tissue regeneration. This technique enables the production of continuous gradient scaffolds, but it also can potentially produce fibers in discrete steps by controlling the movement of the moving barrier/mask in a discrete fashion.

Here, we present a protocol to fabricate electrospun nanofiber scaffolds with gradated organization of fibers and explore their applications in regulating cell morphology/orientation. Gradients with regard to physical and chemical properties of the nanofiber scaffolds offer a wide variety of applications in the biomedical field.

The goal of this protocol is to report a simple method for generating nanofiber scaffolds with gradations in fiber organization and test their possible ...

Techniques for the Evolution of Robust Pentose-fermenting Yeast for Bioconversion of Lignocellulose to Ethanol

Lignocellulosic biomass is an abundant, renewable feedstock useful for production of fuel-grade ethanol and other bio-products. Pretreatment and enzyme saccharification processes release sugars that can be fermented by yeast. Traditional industrial yeasts do not ferment xylose (comprising up to 40% of plant sugars) and are not able to function in concentrated hydrolyzates. Concentrated hydrolyzates are needed to support economical ethanol recovery, but they are laden with toxic byproducts generated during pretreatment. While detoxification methods can render hydrolyzates fermentable, they are costly and generate waste disposal liabilities. Here, adaptive evolution and isolation techniques are described and demonstrated to yield derivatives of the native Scheffersomyces stipitis strain NRRL Y-7124 that are able to efficiently convert hydrolyzates to economically recoverable ethanol despite adverse culture conditions. Improved individuals are enriched in an evolving population using multiple selection pressures reliant on natural genetic diversity of the S. stipitis population and mutations induced by exposures to two diverse hydrolyzates, ethanol or UV radiation. Final evolution cultures are dilution plated to harvest predominant isolates, while intermediate populations, frozen in glycerol at various stages of evolution, are enriched on selective media using appropriate stress gradients to recover most promising isolates through dilution plating. Isolates are screened on various hydrolyzate types and ranked using a novel procedure involving dimensionless relative performance index (RPI) transformations of the xylose uptake rate and ethanol yield data. Using the RPI statistical parameter, an overall relative performance average is calculated to rank isolates based on multiple factors, including culture conditions (varying in nutrients and inhibitors) and kinetic characteristics. Through application of these techniques, derivatives of the parent strain had the following improved features in enzyme saccharified hydrolyzates at pH 5-6: reduced initial lag phase preceding growth, reduced diauxic lag during glucose-xylose transition, significantly enhanced fermentation rates, improved ethanol tolerance and accumulation to 40 g/L.

Adaptive evolution and isolation techniques are described and demonstrated to yield derivatives of Scheffersomyces stipitis strain NRRL Y-7124 that are able to rapidly consume hexose and pentose mixed sugars in enzyme saccharified undetoxified hydrolyzates and to accumulate over 40 g/L ethanol.

Lignocellulosic biomass is an abundant, renewable feedstock useful for production of fuel-grade ethanol and other bio-products. Pretreatment and enzyme ...

Optimized Setup and Protocol for Magnetic Domain Imaging with In Situ Hysteresis Measurement

This paper elaborates the sample preparation protocols required to obtain optimal domain patterns using the Bitter method, focusing on the extra steps compared to standard metallographic sample preparation procedures. The paper proposes a novel bespoke rig for dynamic domain imaging with in situ BH (magnetic hysteresis) measurements and elaborates the protocols for the sensor preparation and the use of the rig to ensure accurate BH measurement. The protocols for static and ordinary dynamic domain imaging (without in situ BH measurements) are also presented. The reported method takes advantage of the convenience and high sensitivity of the traditional Bitter method and enables in situ BH measurement without interrupting or interfering with the domain wall movement processes. This facilitates establishing a direct and quantitative link between the domain wall movement processes&#8211;microstructural feature interactions in ferritic steels with their BH loops. This method is anticipated to become a useful tool for the fundamental study of microstructure&#8211;magnetic property relationships in steels and to help interpret the electromagnetic sensor signals for non-destructive evaluation of steel microstructures.

Optimized Setup and Protocol for Magnetic Domain Imaging with In Situ Hysteresis Measurement

This paper elaborates the sample and sensor preparation procedures and the protocols for using the test rig particularly for dynamic domain imaging with in situ BH measurements in order to achieve optimal domain pattern quality and accurate BH measurements.

This paper elaborates the sample preparation protocols required to obtain optimal domain patterns using the Bitter method, focusing on the extra steps ...

Microhoneycomb Monoliths Prepared by the Unidirectional Freeze-drying of Cellulose Nanofiber Based Sols: Method and Extensions

Monolithic honeycomb structures have been attractive to multidisciplinary fields due to their high strength-to-weight ratio. Particularly, microhoneycomb monoliths (MHMs) with micrometer-scale channels are expected as efficient platforms for reactions and separations because of their large surface areas. Up to now, MHMs have been prepared by a unidirectional freeze-drying (UDF) method only from very limited precursors. Herein, we report a protocol from which a series of MHMs consisting of different components can be obtained. Recently, we found that cellulose nanofibers function as a distinct structure-directing agent towards the formation of MHMs through the UDF process. By mixing the cellulose nanofibers with water soluble substances which do not yield MHMs, a variety of composite MHMs can be prepared. This significantly enriches the chemical constitution of MHMs towards versatile applications.

Here, we present a general protocol to prepare a variety of microhoneycomb monoliths (MHMs) in which fluid can pass through with an extremely low pressure drop. MHMs obtained are expected to be used as filters, catalyst supports, flow-type electrodes, sensors and scaffolds for biomaterials.

Monolithic honeycomb structures have been attractive to multidisciplinary fields due to their high strength-to-weight ratio. Particularly, microhoneycomb ...

Recombinant Collagen I Peptide Microcarriers for Cell Expansion and Their Potential Use As Cell Delivery System in a Bioreactor Model

Tissue engineering is a promising field, focused on developing solutions for the increasing demand on tissues and organs regarding transplantation purposes. The process to generate such tissues is complex, and includes an appropriate combination of specific cell types, scaffolds, and physical or biochemical stimuli to guide cell growth and differentiation. Microcarriers represent an appealing tool to expand cells in a three-dimensional (3D) microenvironment, since they provide higher surface-to volume ratios and mimic more closely the in vivo situation compared to traditional two-dimensional methods. The vascular system, supplying oxygen and nutrients to the cells and ensuring waste removal, constitutes an important building block when generating engineered tissues. In fact, most constructs fail after being implanted due to lacking vascular support. In this study, we present a protocol for endothelial cell expansion on recombinant collagen-based microcarriers under dynamic conditions in spinner flask and bioreactors, and we explain how to determine in this setting cell viability and functionality. In addition, we propose a method for cell delivery for vascularization purposes without additional detachment steps necessary. Furthermore, we provide a strategy to evaluate the cell vascularization potential in a perfusion bioreactor on a decellularized&#160;biological matrix. We believe that the use of the presented methods could lead to the development of new cell-based therapies for a large range of tissue engineering applications in the clinical practice.

We propose a cell expansion protocol on macroporous microcarriers and their use as delivery system in a perfusion bioreactor to seed a decellularized tissue matrix. We also include different techniques to determine cell proliferation and viability of cells cultured on microcarriers. Furthermore, we demonstrate functionality of cells after bioreactor cultures.

Tissue engineering is a promising field, focused on developing solutions for the increasing demand on tissues and organs regarding transplantation ...

Manufacturing Abdominal Aorta Hydrogel Tissue-Mimicking Phantoms for Ultrasound Elastography Validation

Ultrasound (US) elastography, or elasticity imaging, is an adjunct imaging technique that utilizes sequential US images of soft tissues to measure the tissue motion and infer or quantify the underlying biomechanical characteristics. For abdominal aortic aneurysms (AAA), biomechanical properties such as changes in the tissue's elastic modulus and estimates of the tissue stress may be essential for assessing the need for the surgical intervention. Abdominal aortic aneurysms US elastography could be a useful tool to monitor AAA progression and identify changes in biomechanical properties characteristic of high-risk patients.
A preliminary goal in the development of an AAA US elastography technique is the validation of the method using a physically relevant model with known material properties. Here we present a process for the production of AAA tissue-mimicking phantoms with physically relevant geometries and spatially modulated material properties. These tissue phantoms aim to mimic the US properties, material modulus, and geometry of the abdominal aortic aneurysms. Tissue phantoms are made using a polyvinyl alcohol cryogel (PVA-c) and molded using 3D printed parts created using computer aided design (CAD) software. The modulus of the phantoms is controlled by altering the concentration of PVA-c and by changing the number of freeze-thaw cycles used to polymerize the cryogel. The AAA phantoms are connected to a hemodynamic pump, designed to deform the phantoms with the physiologic cyclic pressure and flows. Ultra sound image sequences of the deforming phantoms allowed for the spatial calculation of the pressure normalized strain and the identification of mechanical properties of the vessel wall. Representative results of the pressure normalized strain are presented.

Here we describe a method to manufacture aneurysmal, aortic tissue-mimicking phantoms for the use in testing ultrasound elastography. The combined use of computer-aided design (CAD) and 3-dimensional (3D) printing techniques produce aortic phantoms with predictable, complex geometries to validate the elastographic imaging algorithms with controlled experiments.

Ultrasound (US) elastography, or elasticity imaging, is an adjunct imaging technique that utilizes sequential US images of soft tissues to measure the ...